18th IEEE International Workshop on High Performance Computational Biology
In conjunction with the IEEE International Parallel and Distributed
Processing Symposium
Rio de Janeiro, Brazil
May 20, 2019
| Session I (10am - 12pm) | |
|---|---|
| 10:00-10:15am | Opening Remarks Kamesh Madduri, Program Chair |
| 10:15-11:00am | Invited talk: Ariful
Azad, Indiana University Bloomington Title: HipMCL A High-Performance Parallel Algorithm for Clustering Large-scale Networks |
| 11:00-11:30am | Paper: Accelerating Clustering using Approximate Spanning Tree and
Prime Number based Filter Dhananjai Rao, Sutharzan Sreeskandarajan, Chun Liang |
| 11:30-12:00pm | Paper: Data Distribution for
Phylogenetic Inference with Site Repeats via Judicious Hypergraph
Partitioning Ivo Baar, Lukas Hübner, Peter Oettig, Adrian Zapletal, Sebastian Schlag, Alexandros Stamatakis, Benoit Morel |
| 12:00-1:30pm | Lunch |
| Session II (1:30pm - 3:30pm) | |
| 1:30-2:30pm | Keynote: Ajay
Royyuru, IBM Research Title: Data + AI = Insights in Biology & Medicine |
| 2:30-3:15pm | Invited talk: Rayan
Chikhi, Institut Pasteur Title: High-performance and Single-node Genome Assembly using de Bruijn Graphs |
| 3:15-3:30pm | Short Paper: ArrOW: Experiencing a Parallel Cloud-based de Novo
Assembler Workflow Kary Ocaña, Thaylon Guedes, Daniel de Oliveira |
| 3:30-4:00pm | Coffee Break |
| Session III (4:00pm - 5:30pm) | |
| 4:00-4:30pm | Paper: LBE: A Computational Load
Balancing Algorithm for Speeding up Parallel Peptide Search in
Mass-Spectrometry based Proteomics Muhammad Haseeb, Fatima Afzali, Fahad Saeed |
| 4:30-5:00pm | Paper: Portable GPU Framework for SNP Comparisons Eilliott Binder, Tze Meng Low, Doru Thom Popovici |
| 5:00-5:30pm | Paper: Parallel Decompression of gzip-compressed Files and Random
Access to DNA sequences Maël Kerbiriou, Rayan Chikhi |