| 8:25-8:30am |
Welcome and Introductory Remarks Jaroslaw Zola, David Bader, Srinivas Aluru |
| Session I: Sequence and Structure | |
| 8:30-9am |
Biological Sequence Comparison in Hybrid Platforms with Dynamic Workload Adjustment Fernando Mendonca, Alba Cristina Magalhaes Alves de Melo |
| 9-9:30am |
Accelerating All-to-all Protein Structures Comparison with TMalign Using a NoC Many-cores Processor Architecture Anuj Sharma, Antonis Papanikolaou, Elias S. Manolakos |
| 9:30-10am |
Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce Daniel Yehdego, Boyu Zhang, Vikram Kodimala, Kyle Johnson, Michela Taufer, Ming-Ying Leung |
| 10-10:30am | Coffee Break |
| Session II: Phylogenetics and Metagenomics | |
| 10:30-11am |
A generic Vectorization Scheme and a GPU kernel for the Phylogenetic Likelihood Library Fernando Izquierdo-Carrasco, Alexandros Stamatakis, Simon Berger, Nikolaos Alachiotis, Tomas Flouri, Solon Pissis |
| 11-11:30am |
Boosting the performance of Bayesian divergence time estimation with the Phylogenetic Likelihood Library Diego Darriba, Andre Aberer, Tomas Flouri, Tracy A. Heath, Fernando Izquierdo-Carrasco, Alexandros Stamatakis |
| 11:30-12am |
A Map-Reduce Framework for Clustering Metagenomes Zeehasham Rasheed,Huzefa Rangwala |
| 12-1:30pm | Lunch Break |
| Keynote and Invited Talks | |
| 1:30-2:30pm |
Keynote Talk: Parallel Multiscale Simulations of Brain Aneurysms George Karniadakis, Brown University |
| 2:30-3pm |
HPC Software Libraries for Next-Gen Sequencing Analytics Srinivas Aluru |
| 3-3:30pm |
GPU-accelerated Protein Family Identification for Metagenomics Changjun Wu, Ananth Kalyanaraman |
| 3:30-4pm | Coffee Break |
| Session III: Molecular and Systems Biology | |
| 4-4:30pm |
Polarization Energy on a Cluster of Multicores Jesmin Jahan Tithi, Rezaul A. Chowdhury |
| 4:30-5pm |
GPU-based Steady-State Solution of the Chemical Master Equation Marco Maggioni, Tanya Berger-Wolf, Jie Liang |